IL_9HY6_016

3D structure

PDB id

9HY6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome with nascent chain at linker length of 31 amino acids, with mRNA, P-site and A-site tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GGAG*UGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HY6_016 not in the Motif Atlas

Geometric match to IL_8B0X_076

Geometric discrepancy: 0.1284

The information below is about IL_8B0X_076

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_58355.2

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

43

Unit IDs

9HY6|1|b|G|536
9HY6|1|b|G|537
9HY6|1|b|A|538
9HY6|1|b|G|539
*
9HY6|1|b|U|554
9HY6|1|b|G|555
9HY6|1|b|A|556
9HY6|1|b|C|557

Current chains

Chain b

23S rRNA

Nearby chains

Chain j

Large ribosomal subunit protein uL13

Chain q

Large ribosomal subunit protein bL20