IL_9HY6_059

3D structure

PDB id

9HY6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome with nascent chain at linker length of 31 amino acids, with mRNA, P-site and A-site tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CGAG*UGAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HY6_059 not in the Motif Atlas

Geometric match to IL_9E6Q_021

Geometric discrepancy: 0.1127

The information below is about IL_9E6Q_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_45790.2

Basepair signature

cWW-tSH-L-tHS-cWW

Number of instances in this motif group

12

Unit IDs

9HY6|1|b|C|1526
9HY6|1|b|G|1527
9HY6|1|b|A|1528
9HY6|1|b|G|1529
*
9HY6|1|b|U|1542
9HY6|1|b|G|1543
9HY6|1|b|A|1544
9HY6|1|b|A|1545
9HY6|1|b|G|1546

Current chains

Chain b

23S rRNA

Nearby chains