IL_9HYM_042

3D structure

PDB id

9HYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of WT E.coli ribosome with complexed filament nascent chain at length 34, with mRNA, P-site and A-site tRNAs, and mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CGU*AGUG

Length

7 nucleotides

Bulged bases

9HYM|1|b|G|1248

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HYM_042 not in the Motif Atlas

Homologous match to IL_7A0S_041

Geometric discrepancy: 0.1675

The information below is about IL_7A0S_041

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_42997.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

23

Unit IDs

9HYM|1|b|C|1196
9HYM|1|b|G|1197
9HYM|1|b|U|1198
*
9HYM|1|b|A|1247
9HYM|1|b|G|1248
9HYM|1|b|U|1249
9HYM|1|b|G|1250

Current chains

Chain b

23S rRNA

Nearby chains

Chain e

Large ribosomal subunit protein uL4

Chain l

Large ribosomal subunit protein uL15

Chain q

Large ribosomal subunit protein bL20