IL_9I14_026

3D structure

PDB id

9I14 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF HCT15 POLYSOMES IN HYBRID-PRE STATE

Experimental method

ELECTRON MICROSCOPY

Resolution

3.34 Å

Loop

Sequence

GUGU*GACC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I14_026 not in the Motif Atlas

Geometric match to IL_1D4R_001

Geometric discrepancy: 0.2043

The information below is about IL_1D4R_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.5

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

42

Unit IDs

9I14|1|L5|G|491
9I14|1|L5|U|492
9I14|1|L5|G|493
9I14|1|L5|U|494
*
9I14|1|L5|G|659
9I14|1|L5|A|660
9I14|1|L5|C|661
9I14|1|L5|C|662

Current chains

Chain L5

LSU 28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4