IL_9I14_028

3D structure

PDB id

9I14 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF HCT15 POLYSOMES IN HYBRID-PRE STATE

Experimental method

ELECTRON MICROSCOPY

Resolution

3.34 Å

Loop

Sequence

GCCCGG*UC

Length

8 nucleotides

Bulged bases

9I14|1|L5|C|501, 9I14|1|L5|C|502, 9I14|1|L5|C|503, 9I14|1|L5|G|504

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I14_028 not in the Motif Atlas

Geometric match to IL_7OS0_002

Geometric discrepancy: 0.2187

The information below is about IL_7OS0_002

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_71421.6

Basepair signature

cWW-cWW

Number of instances in this motif group

38

Unit IDs

9I14|1|L5|G|500
9I14|1|L5|C|501
9I14|1|L5|C|502
9I14|1|L5|C|503
9I14|1|L5|G|504
9I14|1|L5|G|505
*
9I14|1|L5|U|653
9I14|1|L5|C|654

Current chains

Chain L5

LSU 28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LQ

60S ribosomal protein L18