IL_9I14_043

3D structure

PDB id

9I14 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF HCT15 POLYSOMES IN HYBRID-PRE STATE

Experimental method

ELECTRON MICROSCOPY

Resolution

3.34 Å

Loop

Sequence

GC*GGC

Length

5 nucleotides

Bulged bases

9I14|1|L5|G|1266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I14_043 not in the Motif Atlas

Homologous match to IL_8GLP_048

Geometric discrepancy: 0.0846

The information below is about IL_8GLP_048

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

83

Unit IDs

9I14|1|L5|G|1244
9I14|1|L5|C|1245
*
9I14|1|L5|G|1265
9I14|1|L5|G|1266
9I14|1|L5|C|1267

Current chains

Chain L5

LSU 28S rRNA

Nearby chains

Chain LF

Large ribosomal subunit protein uL30

Chain Lb

60S ribosomal protein L29