IL_9I14_111

3D structure

PDB id

9I14 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF HCT15 POLYSOMES IN HYBRID-PRE STATE

Experimental method

ELECTRON MICROSCOPY

Resolution

3.34 Å

Loop

Sequence

UCA(A2M)AGU*AA(PSU)GAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9I14|1|L5|U|3715
9I14|1|L5|C|3716
9I14|1|L5|A|3717
9I14|1|L5|A2M|3718
9I14|1|L5|A|3719
9I14|1|L5|G|3720
9I14|1|L5|U|3721
*
9I14|1|L5|A|3732
9I14|1|L5|A|3733
9I14|1|L5|PSU|3734
9I14|1|L5|G|3735
9I14|1|L5|A|3736
9I14|1|L5|A|3737
9I14|1|L5|G|3738

Current chains

Chain L5

LSU 28S rRNA

Nearby chains

Chain B4

Transfer RNA; tRNA

Chain LA

60S ribosomal protein L8

Chain Li

60S ribosomal protein L36

Chain Lo

60S ribosomal protein L36a