IL_9I14_112

3D structure

PDB id

9I14 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF HCT15 POLYSOMES IN HYBRID-PRE STATE

Experimental method

ELECTRON MICROSCOPY

Resolution

3.34 Å

Loop

Sequence

GC*GCAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I14_112 not in the Motif Atlas

Geometric match to IL_9PN5_086

Geometric discrepancy: 0.0589

The information below is about IL_9PN5_086

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_24886.5

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

14

Unit IDs

9I14|1|L5|G|3780
9I14|1|L5|C|3781
*
9I14|1|L5|G|3811
9I14|1|L5|C|3812
9I14|1|L5|A|3813
9I14|1|L5|U|3814

Current chains

Chain L5

LSU 28S rRNA

Nearby chains

Chain Ln

60S ribosomal protein L41