IL_9I14_125

3D structure

PDB id

9I14 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF HCT15 POLYSOMES IN HYBRID-PRE STATE

Experimental method

ELECTRON MICROSCOPY

Resolution

3.34 Å

Loop

Sequence

GG*UCC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I14_125 not in the Motif Atlas

Homologous match to IL_9H3G_116

Geometric discrepancy: 0.1085

The information below is about IL_9H3G_116

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.11

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

44

Unit IDs

9I14|1|L5|G|4400
9I14|1|L5|G|4401
*
9I14|1|L5|U|4442
9I14|1|L5|C|4443
9I14|1|L5|C|4444

Current chains

Chain L5

LSU 28S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LI

60S ribosomal protein L10

Chain Lb

60S ribosomal protein L29