IL_9I14_150

3D structure

PDB id

9I14 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF HCT15 POLYSOMES IN HYBRID-PRE STATE

Experimental method

ELECTRON MICROSCOPY

Resolution

3.34 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I14_150 not in the Motif Atlas

Homologous match to IL_8GLP_169

Geometric discrepancy: 0.2663

The information below is about IL_8GLP_169

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.6

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

81

Unit IDs

9I14|1|L5|G|4769
9I14|1|L5|U|4770
9I14|1|L5|C|4771
*
9I14|1|L5|G|4863
9I14|1|L5|U|4864
9I14|1|L5|C|4865

Current chains

Chain L5

LSU 28S rRNA

Nearby chains

Chain LH

60S ribosomal protein L9

Chain LO

60S ribosomal protein L13a