3D structure

PDB id
9I14 (explore in PDB, NAKB, or RNA 3D Hub)
Description
CRYO-EM STRUCTURE OF HCT15 POLYSOMES IN HYBRID-PRE STATE
Experimental method
ELECTRON MICROSCOPY
Resolution
3.34 Å

Loop

Sequence
GAAAAAAUU*ACCGCAGC
Length
17 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

9I14|1|S2|G|807
9I14|1|S2|A|808
9I14|1|S2|A|809
9I14|1|S2|A|810
9I14|1|S2|A|811
9I14|1|S2|A|812
9I14|1|S2|A|813
9I14|1|S2|U|814
9I14|1|S2|U|815
*
9I14|1|S2|A|849
9I14|1|S2|C|850
9I14|1|S2|C|851
9I14|1|S2|G|852
9I14|1|S2|C|853
9I14|1|S2|A|854
9I14|1|S2|G|855
9I14|1|S2|C|856

Current chains

Chain S2
SSU 18S rRNA

Nearby chains

Chain SE
Small ribosomal subunit protein eS4, X isoform
Chain SJ
40S ribosomal protein S9
Chain SL
40S ribosomal protein S11
Chain SW
40S ribosomal protein S15a

Coloring options:

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