IL_9I14_221

3D structure

PDB id

9I14 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF HCT15 POLYSOMES IN HYBRID-PRE STATE

Experimental method

ELECTRON MICROSCOPY

Resolution

3.34 Å

Loop

Sequence

GGA*UU

Length

5 nucleotides

Bulged bases

9I14|1|S2|G|1207

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I14_221 not in the Motif Atlas

Homologous match to IL_9H3G_211

Geometric discrepancy: 0.1078

The information below is about IL_9H3G_211

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

83

Unit IDs

9I14|1|S2|G|1206
9I14|1|S2|G|1207
9I14|1|S2|A|1208
*
9I14|1|S2|U|1691
9I14|1|S2|U|1692

Current chains

Chain S2

SSU 18S rRNA

Nearby chains

Chain A4

mRNA

Chain B4

Transfer RNA; tRNA

Chain Sa

40S ribosomal protein S26