IL_9I2D_012

3D structure

PDB id

9I2D (explore in PDB, NAKB, or RNA 3D Hub)

Description

NMT1-NAC bound human RNC with 10 amino acid ARF1-linker

Experimental method

ELECTRON MICROSCOPY

Resolution

2.19 Å

Loop

Sequence

CCGCUCGUGG*CGGCG

Length

15 nucleotides

Bulged bases

9I2D|1|L5|C|183, 9I2D|1|L5|C|185, 9I2D|1|L5|G|186, 9I2D|1|L5|U|187, 9I2D|1|L5|G|188

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9I2D|1|L5|C|180
9I2D|1|L5|C|181
9I2D|1|L5|G|182
9I2D|1|L5|C|183
9I2D|1|L5|U|184
9I2D|1|L5|C|185
9I2D|1|L5|G|186
9I2D|1|L5|U|187
9I2D|1|L5|G|188
9I2D|1|L5|G|189
*
9I2D|1|L5|C|252
9I2D|1|L5|G|253
9I2D|1|L5|G|254
9I2D|1|L5|C|255
9I2D|1|L5|G|256

Current chains

Chain L5

28S rRNA

Nearby chains

Chain L8

5.8S ribosomal RNA; 5.8S rRNA

Chain LL

60S ribosomal protein L13

Chain Lh

60S ribosomal protein L35

Chain Lj

60S ribosomal protein L37