IL_9I2D_025

3D structure

PDB id

9I2D (explore in PDB, NAKB, or RNA 3D Hub)

Description

NMT1-NAC bound human RNC with 10 amino acid ARF1-linker

Experimental method

ELECTRON MICROSCOPY

Resolution

2.19 Å

Loop

Sequence

GUGUCGGCGGCCCGG*UCCCCCGACC

Length

25 nucleotides

Bulged bases

9I2D|1|L5|C|501, 9I2D|1|L5|C|502, 9I2D|1|L5|C|503, 9I2D|1|L5|G|504

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9I2D|1|L5|G|491
9I2D|1|L5|U|492
9I2D|1|L5|G|493
9I2D|1|L5|U|494
9I2D|1|L5|C|495
9I2D|1|L5|G|496
9I2D|1|L5|G|497
9I2D|1|L5|C|498
9I2D|1|L5|G|499
9I2D|1|L5|G|500
9I2D|1|L5|C|501
9I2D|1|L5|C|502
9I2D|1|L5|C|503
9I2D|1|L5|G|504
9I2D|1|L5|G|505
*
9I2D|1|L5|U|653
9I2D|1|L5|C|654
9I2D|1|L5|C|655
9I2D|1|L5|C|656
9I2D|1|L5|C|657
9I2D|1|L5|C|658
9I2D|1|L5|G|659
9I2D|1|L5|A|660
9I2D|1|L5|C|661
9I2D|1|L5|C|662

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LQ

60S ribosomal protein L18