IL_9I2D_116

3D structure

PDB id

9I2D (explore in PDB, NAKB, or RNA 3D Hub)

Description

NMT1-NAC bound human RNC with 10 amino acid ARF1-linker

Experimental method

ELECTRON MICROSCOPY

Resolution

2.19 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

9I2D|1|L5|A|3785, 9I2D|1|L5|C|3791, 9I2D|1|L5|C|3810

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9I2D|1|L5|C|3781
9I2D|1|L5|C|3782
9I2D|1|L5|A|3783
9I2D|1|L5|A|3784
9I2D|1|L5|A|3785
9I2D|1|L5|U|3786
9I2D|1|L5|G|3787
9I2D|1|L5|C|3788
9I2D|1|L5|C|3789
9I2D|1|L5|U|3790
9I2D|1|L5|C|3791
9I2D|1|L5|G|3792
*
9I2D|1|L5|C|3808
9I2D|1|L5|G|3809
9I2D|1|L5|C|3810
9I2D|1|L5|G|3811

Current chains

Chain L5

28S rRNA

Nearby chains

Chain CR

Eukaryotic peptide chain release factor subunit 1

Chain Ln

60S ribosomal protein L41

Chain S2

Small subunit ribosomal RNA; SSU rRNA