IL_9I2D_231

3D structure

PDB id

9I2D (explore in PDB, NAKB, or RNA 3D Hub)

Description

NMT1-NAC bound human RNC with 10 amino acid ARF1-linker

Experimental method

ELECTRON MICROSCOPY

Resolution

2.19 Å

Loop

Sequence

ACAG*CUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I2D_231 not in the Motif Atlas

Geometric match to IL_6DTD_001

Geometric discrepancy: 0.3371

The information below is about IL_6DTD_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_10994.3

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

9I2D|1|S2|A|1291
9I2D|1|S2|C|1292
9I2D|1|S2|A|1293
9I2D|1|S2|G|1294
*
9I2D|1|S2|C|1305
9I2D|1|S2|U|1306
9I2D|1|S2|U|1307
9I2D|1|S2|U|1308

Current chains

Chain S2

18S rRNA

Nearby chains

Chain Sd

40S ribosomal protein S29

Chain Sf

Ubiquitin