IL_9I2E_207

3D structure

PDB id

9I2E (explore in PDB, NAKB, or RNA 3D Hub)

Description

NMT1-NAC bound human ribosome (combined translational states)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

GAC*GGC

Length

6 nucleotides

Bulged bases

9I2E|1|S2|A|536, 9I2E|1|S2|G|547

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I2E_207 not in the Motif Atlas

Geometric match to IL_1U9S_003

Geometric discrepancy: 0.1787

The information below is about IL_1U9S_003

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_71421.6

Basepair signature

cWW-cWW

Number of instances in this motif group

38

Unit IDs

9I2E|1|S2|G|535
9I2E|1|S2|A|536
9I2E|1|S2|C|537
*
9I2E|1|S2|G|546
9I2E|1|S2|G|547
9I2E|1|S2|C|548

Current chains

Chain S2

18S rRNA

Nearby chains

Chain Se

Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein