IL_9I89_055

3D structure

PDB id

9I89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the A2058-dimethylated Staphylococcus aureus 70S ribosome complexed with clincelin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

UAAU*AAAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I89_055 not in the Motif Atlas

Geometric match to IL_6E7L_002

Geometric discrepancy: 0.2795

The information below is about IL_6E7L_002

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_69065.2

Basepair signature

cWW-L-R-L-R-cWW

Number of instances in this motif group

3

Unit IDs

9I89|1|A|U|1448
9I89|1|A|A|1449
9I89|1|A|A|1450
9I89|1|A|U|1451
*
9I89|1|A|A|1632
9I89|1|A|A|1633
9I89|1|A|A|1634
9I89|1|A|A|1635

Current chains

Chain A

23S ribosomal RNA

Nearby chains