IL_9I89_062

3D structure

PDB id

9I89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the A2058-dimethylated Staphylococcus aureus 70S ribosome complexed with clincelin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

UG*CGUUAAG

Length

9 nucleotides

Bulged bases

9I89|1|A|U|1552

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I89_062 not in the Motif Atlas

Geometric match to IL_9DFE_060

Geometric discrepancy: 0.2837

The information below is about IL_9DFE_060

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_46086.1

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

1

Unit IDs

9I89|1|A|U|1525
9I89|1|A|G|1526
*
9I89|1|A|C|1549
9I89|1|A|G|1550
9I89|1|A|U|1551
9I89|1|A|U|1552
9I89|1|A|A|1553
9I89|1|A|A|1554
9I89|1|A|G|1555

Current chains

Chain A

23S ribosomal RNA

Nearby chains