IL_9I89_067

3D structure

PDB id

9I89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the A2058-dimethylated Staphylococcus aureus 70S ribosome complexed with clincelin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

GGAACUCGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I89_067 not in the Motif Atlas

Geometric match to IL_8B0X_180

Geometric discrepancy: 0.0688

The information below is about IL_8B0X_180

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80252.2

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

11

Unit IDs

9I89|1|A|G|1710
9I89|1|A|G|1711
9I89|1|A|A|1712
9I89|1|A|A|1713
9I89|1|A|C|1714
9I89|1|A|U|1715
9I89|1|A|C|1716
9I89|1|A|G|1717
9I89|1|A|G|1718
*
9I89|1|A|C|2017
9I89|1|A|U|2018
9I89|1|A|G|2019
9I89|1|A|U|2020
9I89|1|A|C|2021

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain H

Large ribosomal subunit protein uL3

Chain N

Large ribosomal subunit protein uL14