IL_9I89_076

3D structure

PDB id

9I89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the A2058-dimethylated Staphylococcus aureus 70S ribosome complexed with clincelin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

UUAAG*CGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I89_076 not in the Motif Atlas

Homologous match to IL_7A0S_069

Geometric discrepancy: 0.2259

The information below is about IL_7A0S_069

Detailed Annotation

UAA/GAN with extra stack

Broad Annotation

No text annotation

Motif group

IL_89021.4

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

8

Unit IDs

9I89|1|A|U|1878
9I89|1|A|U|1879
9I89|1|A|A|1880
9I89|1|A|A|1881
9I89|1|A|G|1882
*
9I89|1|A|C|1914
9I89|1|A|G|1915
9I89|1|A|A|1916
9I89|1|A|A|1917
9I89|1|A|G|1918

Current chains

Chain A

23S ribosomal RNA

Nearby chains