IL_9I89_078

3D structure

PDB id

9I89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the A2058-dimethylated Staphylococcus aureus 70S ribosome complexed with clincelin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

UUAG*CGAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I89_078 not in the Motif Atlas

Geometric match to IL_8B0X_136

Geometric discrepancy: 0.1285

The information below is about IL_8B0X_136

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77691.7

Basepair signature

cWW-tSH-L-R-L-cWW

Number of instances in this motif group

7

Unit IDs

9I89|1|A|U|1891
9I89|1|A|U|1892
9I89|1|A|A|1893
9I89|1|A|G|1894
*
9I89|1|A|C|1901
9I89|1|A|G|1902
9I89|1|A|A|1903
9I89|1|A|A|1904
9I89|1|A|G|1905

Current chains

Chain A

23S ribosomal RNA

Nearby chains