IL_9I89_080

3D structure

PDB id

9I89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the A2058-dimethylated Staphylococcus aureus 70S ribosome complexed with clincelin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

CGAAAUUCCUUG*CCCG

Length

16 nucleotides

Bulged bases

9I89|1|A|A|1965, 9I89|1|A|U|1971, 9I89|1|A|C|1990

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9I89|1|A|C|1961
9I89|1|A|G|1962
9I89|1|A|A|1963
9I89|1|A|A|1964
9I89|1|A|A|1965
9I89|1|A|U|1966
9I89|1|A|U|1967
9I89|1|A|C|1968
9I89|1|A|C|1969
9I89|1|A|U|1970
9I89|1|A|U|1971
9I89|1|A|G|1972
*
9I89|1|A|C|1988
9I89|1|A|C|1989
9I89|1|A|C|1990
9I89|1|A|G|1991

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain G

Large ribosomal subunit protein uL2

Chain a

Small subunit ribosomal RNA; SSU rRNA