IL_9I89_094

3D structure

PDB id

9I89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the A2058-dimethylated Staphylococcus aureus 70S ribosome complexed with clincelin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

AUC*GGUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I89_094 not in the Motif Atlas

Homologous match to IL_7A0S_086

Geometric discrepancy: 0.1436

The information below is about IL_7A0S_086

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_36931.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

26

Unit IDs

9I89|1|A|A|2486
9I89|1|A|U|2487
9I89|1|A|C|2488
*
9I89|1|A|G|2516
9I89|1|A|G|2517
9I89|1|A|U|2518
9I89|1|A|U|2519
9I89|1|A|U|2520

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain P

Large ribosomal subunit protein uL16