IL_9I89_105

3D structure

PDB id

9I89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the A2058-dimethylated Staphylococcus aureus 70S ribosome complexed with clincelin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

UU*AUAG

Length

6 nucleotides

Bulged bases

9I89|1|A|U|2739, 9I89|1|A|A|2740

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I89_105 not in the Motif Atlas

Homologous match to IL_7A0S_097

Geometric discrepancy: 0.1961

The information below is about IL_7A0S_097

Detailed Annotation

Multiple bulged bases

Broad Annotation

Multiple bulged bases

Motif group

IL_44609.3

Basepair signature

cWW-cWW

Number of instances in this motif group

26

Unit IDs

9I89|1|A|U|2722
9I89|1|A|U|2723
*
9I89|1|A|A|2738
9I89|1|A|U|2739
9I89|1|A|A|2740
9I89|1|A|G|2741

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain Q

Large ribosomal subunit protein bL17

Chain S

Large ribosomal subunit protein bL19