IL_9I89_109

3D structure

PDB id

9I89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the A2058-dimethylated Staphylococcus aureus 70S ribosome complexed with clincelin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

UGGAAG*UGGAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I89_109 not in the Motif Atlas

Homologous match to IL_7A0S_101

Geometric discrepancy: 0.3371

The information below is about IL_7A0S_101

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_48489.2

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

9

Unit IDs

9I89|1|A|U|2867
9I89|1|A|G|2868
9I89|1|A|G|2869
9I89|1|A|A|2870
9I89|1|A|A|2871
9I89|1|A|G|2872
*
9I89|1|A|U|2885
9I89|1|A|G|2886
9I89|1|A|G|2887
9I89|1|A|A|2888
9I89|1|A|G|2889

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain Q

Large ribosomal subunit protein bL17

Chain S

Large ribosomal subunit protein bL19