IL_9I89_123

3D structure

PDB id

9I89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the A2058-dimethylated Staphylococcus aureus 70S ribosome complexed with clincelin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

CUACC*GAUG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I89_123 not in the Motif Atlas

Homologous match to IL_6CZR_120

Geometric discrepancy: 0.1749

The information below is about IL_6CZR_120

Detailed Annotation

Minor groove platform related

Broad Annotation

Minor groove platform related

Motif group

IL_64231.4

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

12

Unit IDs

9I89|1|a|C|132
9I89|1|a|U|133
9I89|1|a|A|134
9I89|1|a|C|135
9I89|1|a|C|136
*
9I89|1|a|G|235
9I89|1|a|A|236
9I89|1|a|U|237
9I89|1|a|G|238

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain q

Small ribosomal subunit protein bS16

Chain u

Small ribosomal subunit protein bS20