IL_9I89_139

3D structure

PDB id

9I89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the A2058-dimethylated Staphylococcus aureus 70S ribosome complexed with clincelin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

GU*AAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9I89_139 not in the Motif Atlas

Homologous match to IL_6CZR_137

Geometric discrepancy: 0.2099

The information below is about IL_6CZR_137

Detailed Annotation

Major groove minor groove platform; mini C-loop

Broad Annotation

No text annotation

Motif group

IL_68140.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

19

Unit IDs

9I89|1|a|G|605
9I89|1|a|U|606
*
9I89|1|a|A|648
9I89|1|a|A|649
9I89|1|a|A|650
9I89|1|a|C|651

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain i

Small ribosomal subunit protein uS8

Chain r

Small ribosomal subunit protein uS17