IL_9IOT_030

3D structure

PDB id

9IOT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Escherichia coli hibernating ribosome with RNase I mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GCAAG*CAACC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9IOT_030 not in the Motif Atlas

Geometric match to IL_4WFL_001

Geometric discrepancy: 0.1914

The information below is about IL_4WFL_001

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_87767.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

9IOT|1|A|G|875
9IOT|1|A|C|876
9IOT|1|A|A|877
9IOT|1|A|A|878
9IOT|1|A|G|879
*
9IOT|1|A|C|898
9IOT|1|A|A|899
9IOT|1|A|A|900
9IOT|1|A|C|901
9IOT|1|A|C|902

Current chains

Chain A

23S rRNA

Nearby chains

Chain O

Large ribosomal subunit protein uL16