IL_9IOT_041

3D structure

PDB id

9IOT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Escherichia coli hibernating ribosome with RNase I mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUAAG*UAUC

Length

9 nucleotides

Bulged bases

9IOT|1|A|A|1205

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9IOT_041 not in the Motif Atlas

Geometric match to IL_5J7L_287

Geometric discrepancy: 0.0791

The information below is about IL_5J7L_287

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_91920.1

Basepair signature

cWW-cWW-tHH-cWW

Number of instances in this motif group

1

Unit IDs

9IOT|1|A|G|1202
9IOT|1|A|U|1203
9IOT|1|A|A|1204
9IOT|1|A|A|1205
9IOT|1|A|G|1206
*
9IOT|1|A|U|1240
9IOT|1|A|A|1241
9IOT|1|A|U|1242
9IOT|1|A|C|1243

Current chains

Chain A

23S rRNA

Nearby chains

Chain F

50S ribosomal protein L4

Chain N

Large ribosomal subunit protein uL15