IL_9IOT_047

3D structure

PDB id

9IOT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Escherichia coli hibernating ribosome with RNase I mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGAGG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9IOT_047 not in the Motif Atlas

Geometric match to IL_5J7L_293

Geometric discrepancy: 0.0612

The information below is about IL_5J7L_293

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

9IOT|1|A|C|1357
9IOT|1|A|G|1358
9IOT|1|A|A|1359
9IOT|1|A|G|1360
9IOT|1|A|G|1361
*
9IOT|1|A|C|1370
9IOT|1|A|G|1371
9IOT|1|A|U|1372
9IOT|1|A|A|1373
9IOT|1|A|G|1374

Current chains

Chain A

23S rRNA

Nearby chains

Chain 5

50S ribosomal protein L34

Chain D

Large ribosomal subunit protein uL2

Chain Z

Large ribosomal subunit protein bL28