IL_9IOT_074

3D structure

PDB id

9IOT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Escherichia coli hibernating ribosome with RNase I mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGAAA(5MU)UCCUUG*C(5MC)UG

Length

16 nucleotides

Bulged bases

9IOT|1|A|A|1938, 9IOT|1|A|U|1944

QA status

Modified nucleotides: 5MU, 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9IOT|1|A|C|1934
9IOT|1|A|G|1935
9IOT|1|A|A|1936
9IOT|1|A|A|1937
9IOT|1|A|A|1938
9IOT|1|A|5MU|1939
9IOT|1|A|U|1940
9IOT|1|A|C|1941
9IOT|1|A|C|1942
9IOT|1|A|U|1943
9IOT|1|A|U|1944
9IOT|1|A|G|1945
*
9IOT|1|A|C|1961
9IOT|1|A|5MC|1962
9IOT|1|A|U|1963
9IOT|1|A|G|1964

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

Large ribosomal subunit protein uL2

Chain a

Small subunit ribosomal RNA; SSU rRNA