IL_9IOT_101

3D structure

PDB id

9IOT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Escherichia coli hibernating ribosome with RNase I mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CU*AAG

Length

5 nucleotides

Bulged bases

9IOT|1|A|A|2800

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9IOT_101 not in the Motif Atlas

Geometric match to IL_9DFE_058

Geometric discrepancy: 0.263

The information below is about IL_9DFE_058

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

9IOT|1|A|C|2795
9IOT|1|A|U|2796
*
9IOT|1|A|A|2799
9IOT|1|A|A|2800
9IOT|1|A|G|2801

Current chains

Chain A

23S rRNA

Nearby chains