IL_9IOT_102
3D structure
- PDB id
- 9IOT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Escherichia coli hibernating ribosome with RNase I mutant
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CUGAAG*CGUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9IOT_102 not in the Motif Atlas
- Geometric match to IL_5J7L_351
- Geometric discrepancy: 0.0858
- The information below is about IL_5J7L_351
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_29471.1
- Basepair signature
- cWW-cWW-L-tHS-L-cWW
- Number of instances in this motif group
- 1
Unit IDs
9IOT|1|A|C|2806
9IOT|1|A|U|2807
9IOT|1|A|G|2808
9IOT|1|A|A|2809
9IOT|1|A|A|2810
9IOT|1|A|G|2811
*
9IOT|1|A|C|2889
9IOT|1|A|G|2890
9IOT|1|A|U|2891
9IOT|1|A|G|2892
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 3
- Large ribosomal subunit protein bL32
- Chain E
- 50S ribosomal protein L3
- Chain U
- 50S ribosomal protein L22
Coloring options: