IL_9IOT_104
3D structure
- PDB id
- 9IOT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Escherichia coli hibernating ribosome with RNase I mutant
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GGUG*CUAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9IOT_104 not in the Motif Atlas
- Geometric match to IL_5J7L_353
- Geometric discrepancy: 0.0502
- The information below is about IL_5J7L_353
- Detailed Annotation
- Multiple bulged bases with non-canonical cWW
- Broad Annotation
- Multiple bulged bases with non-canonical cWW
- Motif group
- IL_64231.5
- Basepair signature
- cWW-cWW-L-R-L-cWW
- Number of instances in this motif group
- 11
Unit IDs
9IOT|1|A|G|2843
9IOT|1|A|G|2844
9IOT|1|A|U|2845
9IOT|1|A|G|2846
*
9IOT|1|A|C|2870
9IOT|1|A|U|2871
9IOT|1|A|A|2872
9IOT|1|A|A|2873
9IOT|1|A|C|2874
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain P
- Large ribosomal subunit protein bL17
- Chain R
- Large ribosomal subunit protein bL19
Coloring options: