IL_9IOT_105

3D structure

PDB id

9IOT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Escherichia coli hibernating ribosome with RNase I mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UGUAAG*UUGAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9IOT_105 not in the Motif Atlas

Geometric match to IL_5J7L_354

Geometric discrepancy: 0.0614

The information below is about IL_5J7L_354

Detailed Annotation

tHS double platform

Broad Annotation

No text annotation

Motif group

IL_70411.2

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

7

Unit IDs

9IOT|1|A|U|2847
9IOT|1|A|G|2848
9IOT|1|A|U|2849
9IOT|1|A|A|2850
9IOT|1|A|A|2851
9IOT|1|A|G|2852
*
9IOT|1|A|U|2865
9IOT|1|A|U|2866
9IOT|1|A|G|2867
9IOT|1|A|A|2868
9IOT|1|A|G|2869

Current chains

Chain A

23S rRNA

Nearby chains

Chain P

Large ribosomal subunit protein bL17

Chain R

Large ribosomal subunit protein bL19