IL_9IOT_128

3D structure

PDB id

9IOT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Escherichia coli hibernating ribosome with RNase I mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9IOT_128 not in the Motif Atlas

Geometric match to IL_5J7L_020

Geometric discrepancy: 0.085

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

9IOT|1|a|U|409
9IOT|1|a|G|410
9IOT|1|a|A|411
9IOT|1|a|A|412
9IOT|1|a|G|413
9IOT|1|a|A|414
9IOT|1|a|A|415
9IOT|1|a|G|416
*
9IOT|1|a|U|427
9IOT|1|a|G|428
9IOT|1|a|U|429
9IOT|1|a|A|430
9IOT|1|a|A|431
9IOT|1|a|A|432
9IOT|1|a|G|433

Current chains

Chain a

16S rRNA

Nearby chains

Chain d

Small ribosomal subunit protein uS4