IL_9IOT_153

3D structure

PDB id

9IOT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Escherichia coli hibernating ribosome with RNase I mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GAAG*UGUGCCUUCGGGAAC

Length

19 nucleotides

Bulged bases

9IOT|1|a|U|1030, 9IOT|1|a|C|1031, 9IOT|1|a|G|1032

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9IOT|1|a|G|1003
9IOT|1|a|A|1004
9IOT|1|a|A|1005
9IOT|1|a|G|1006
*
9IOT|1|a|U|1023
9IOT|1|a|G|1024
9IOT|1|a|U|1025
9IOT|1|a|G|1026
9IOT|1|a|C|1027
9IOT|1|a|C|1028
9IOT|1|a|U|1029
9IOT|1|a|U|1030
9IOT|1|a|C|1031
9IOT|1|a|G|1032
9IOT|1|a|G|1033
9IOT|1|a|G|1034
9IOT|1|a|A|1035
9IOT|1|a|A|1036
9IOT|1|a|C|1037

Current chains

Chain a

16S rRNA

Nearby chains

Chain n

Small ribosomal subunit protein uS14

Chain z

Ribonuclease I