3D structure

PDB id
9J1M (explore in PDB, NAKB, or RNA 3D Hub)
Description
KU13-bond Mycobacterium tuberculosis 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2.33 Å

Loop

Sequence
GUGGAUG*CUGAAAC
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9J1M_001 not in the Motif Atlas
Geometric match to IL_4WF9_001
Geometric discrepancy: 0.0702
The information below is about IL_4WF9_001
Detailed Annotation
Triple sheared with non-canonical cWW
Broad Annotation
Triple sheared
Motif group
IL_22311.1
Basepair signature
cWW-cWW-tSH-tHS-tHS-L-R-cWW
Number of instances in this motif group
10

Unit IDs

9J1M|1|A|G|24
9J1M|1|A|U|25
9J1M|1|A|G|26
9J1M|1|A|G|27
9J1M|1|A|A|28
9J1M|1|A|U|29
9J1M|1|A|G|30
*
9J1M|1|A|C|598
9J1M|1|A|U|599
9J1M|1|A|G|600
9J1M|1|A|A|601
9J1M|1|A|A|602
9J1M|1|A|A|603
9J1M|1|A|C|604

Current chains

Chain A
23S rRNA

Nearby chains

Chain 0
Large ribosomal subunit protein bL32
Chain Q
Large ribosomal subunit protein bL20
Chain S
Large ribosomal subunit protein uL22

Coloring options:


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