IL_9J1M_006

3D structure

PDB id

9J1M (explore in PDB, NAKB, or RNA 3D Hub)

Description

KU13-bond Mycobacterium tuberculosis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

GGAAGUG*CUCAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9J1M_006 not in the Motif Atlas

Geometric match to IL_9DFE_006

Geometric discrepancy: 0.0757

The information below is about IL_9DFE_006

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.2

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

19

Unit IDs

9J1M|1|A|G|190
9J1M|1|A|G|191
9J1M|1|A|A|192
9J1M|1|A|A|193
9J1M|1|A|G|194
9J1M|1|A|U|195
9J1M|1|A|G|196
*
9J1M|1|A|C|203
9J1M|1|A|U|204
9J1M|1|A|C|205
9J1M|1|A|A|206
9J1M|1|A|G|207
9J1M|1|A|U|208
9J1M|1|A|A|209
9J1M|1|A|C|210

Current chains

Chain A

23S rRNA

Nearby chains

Chain L

Large ribosomal subunit protein uL15

Chain X

Large ribosomal subunit protein bL28