IL_9J1M_018

3D structure

PDB id

9J1M (explore in PDB, NAKB, or RNA 3D Hub)

Description

KU13-bond Mycobacterium tuberculosis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

GGG*UC

Length

5 nucleotides

Bulged bases

9J1M|1|A|G|694

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9J1M_018 not in the Motif Atlas

Geometric match to IL_9DFE_018

Geometric discrepancy: 0.3748

The information below is about IL_9DFE_018

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

69

Unit IDs

9J1M|1|A|G|693
9J1M|1|A|G|694
9J1M|1|A|G|695
*
9J1M|1|A|U|794
9J1M|1|A|C|795

Current chains

Chain A

23S rRNA

Nearby chains

Chain 3

Large ribosomal subunit protein bL35

Chain E

Large ribosomal subunit protein uL4

Chain L

Large ribosomal subunit protein uL15