IL_9J1M_033

3D structure

PDB id

9J1M (explore in PDB, NAKB, or RNA 3D Hub)

Description

KU13-bond Mycobacterium tuberculosis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

GAU*AGC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9J1M_033 not in the Motif Atlas

Geometric match to IL_8C3A_414

Geometric discrepancy: 0.1815

The information below is about IL_8C3A_414

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_42997.1

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

18

Unit IDs

9J1M|1|A|G|1000
9J1M|1|A|A|1001
9J1M|1|A|U|1002
*
9J1M|1|A|A|1034
9J1M|1|A|G|1035
9J1M|1|A|C|1036

Current chains

Chain A

23S rRNA

Nearby chains

Chain M

Large ribosomal subunit protein uL16

Chain V

Large ribosomal subunit protein bL25