IL_9J1M_034

3D structure

PDB id

9J1M (explore in PDB, NAKB, or RNA 3D Hub)

Description

KU13-bond Mycobacterium tuberculosis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

CCGAUG*CUGACG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9J1M_034 not in the Motif Atlas

Geometric match to IL_8P9A_410

Geometric discrepancy: 0.2955

The information below is about IL_8P9A_410

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57885.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

9J1M|1|A|C|1005
9J1M|1|A|C|1006
9J1M|1|A|G|1007
9J1M|1|A|A|1008
9J1M|1|A|U|1009
9J1M|1|A|G|1010
*
9J1M|1|A|C|1026
9J1M|1|A|U|1027
9J1M|1|A|G|1028
9J1M|1|A|A|1029
9J1M|1|A|C|1030
9J1M|1|A|G|1031

Current chains

Chain A

23S rRNA

Nearby chains

Chain M

Large ribosomal subunit protein uL16

Chain V

Large ribosomal subunit protein bL25