IL_9J1M_036

3D structure

PDB id

9J1M (explore in PDB, NAKB, or RNA 3D Hub)

Description

KU13-bond Mycobacterium tuberculosis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

GG*UAC

Length

5 nucleotides

Bulged bases

9J1M|1|A|A|1096

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9J1M_036 not in the Motif Atlas

Geometric match to IL_8P9A_399

Geometric discrepancy: 0.3475

The information below is about IL_8P9A_399

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

9J1M|1|A|G|1077
9J1M|1|A|G|1078
*
9J1M|1|A|U|1095
9J1M|1|A|A|1096
9J1M|1|A|C|1097

Current chains

Chain A

23S rRNA

Nearby chains

Chain 7

30S ribosomal protein THX

Chain B

5S ribosomal RNA; 5S rRNA

Chain Z

Large ribosomal subunit protein uL30