IL_9J1M_040
3D structure
- PDB id
- 9J1M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- KU13-bond Mycobacterium tuberculosis 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.33 Å
Loop
- Sequence
- GCG*CC
- Length
- 5 nucleotides
- Bulged bases
- 9J1M|1|A|C|1141
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9J1M_040 not in the Motif Atlas
- Geometric match to IL_3W3S_001
- Geometric discrepancy: 0.3652
- The information below is about IL_3W3S_001
- Detailed Annotation
- Single bulged C
- Broad Annotation
- No text annotation
- Motif group
- IL_61258.15
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 41
Unit IDs
9J1M|1|A|G|1140
9J1M|1|A|C|1141
9J1M|1|A|G|1142
*
9J1M|1|A|C|1279
9J1M|1|A|C|1280
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain J
- Large ribosomal subunit protein uL13
- Chain Q
- Large ribosomal subunit protein bL20
Coloring options: