IL_9J1M_042
3D structure
- PDB id
- 9J1M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- KU13-bond Mycobacterium tuberculosis 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.33 Å
Loop
- Sequence
- GGGAAAG*CGAUAAUGUAGCGGGGC
- Length
- 24 nucleotides
- Bulged bases
- 9J1M|1|A|U|1256, 9J1M|1|A|U|1259
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9J1M_042 not in the Motif Atlas
- Geometric match to IL_5J7L_281
- Geometric discrepancy: 0.131
- The information below is about IL_5J7L_281
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_50715.3
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
- Number of instances in this motif group
- 4
Unit IDs
9J1M|1|A|G|1153
9J1M|1|A|G|1154
9J1M|1|A|G|1155
9J1M|1|A|A|1156
9J1M|1|A|A|1157
9J1M|1|A|A|1158
9J1M|1|A|G|1159
*
9J1M|1|A|C|1253
9J1M|1|A|G|1254
9J1M|1|A|A|1255
9J1M|1|A|U|1256
9J1M|1|A|A|1257
9J1M|1|A|A|1258
9J1M|1|A|U|1259
9J1M|1|A|G|1260
9J1M|1|A|U|1261
9J1M|1|A|A|1262
9J1M|1|A|G|1263
9J1M|1|A|C|1264
9J1M|1|A|G|1265
9J1M|1|A|G|1266
9J1M|1|A|G|1267
9J1M|1|A|G|1268
9J1M|1|A|C|1269
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 4
- Large ribosomal subunit protein bL36
- Chain 7
- 30S ribosomal protein THX
- Chain D
- Large ribosomal subunit protein uL3
- Chain J
- Large ribosomal subunit protein uL13
- Chain M
- Large ribosomal subunit protein uL16
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