IL_9J1M_056

3D structure

PDB id

9J1M (explore in PDB, NAKB, or RNA 3D Hub)

Description

KU13-bond Mycobacterium tuberculosis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

CGGUAG*UGAGAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9J1M_056 not in the Motif Atlas

Geometric match to IL_3LQX_002

Geometric discrepancy: 0.2623

The information below is about IL_3LQX_002

Detailed Annotation

tSH-tHW-tHS-cWW

Broad Annotation

No text annotation

Motif group

IL_35186.2

Basepair signature

cWW-tSH-tHW-L-R-cWW-cWW

Number of instances in this motif group

6

Unit IDs

9J1M|1|A|C|1711
9J1M|1|A|G|1712
9J1M|1|A|G|1713
9J1M|1|A|U|1714
9J1M|1|A|A|1715
9J1M|1|A|G|1716
*
9J1M|1|A|U|1752
9J1M|1|A|G|1753
9J1M|1|A|A|1754
9J1M|1|A|G|1755
9J1M|1|A|A|1756
9J1M|1|A|G|1757

Current chains

Chain A

23S rRNA

Nearby chains