IL_9J1M_056
3D structure
- PDB id
- 9J1M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- KU13-bond Mycobacterium tuberculosis 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.33 Å
Loop
- Sequence
- CGGUAG*UGAGAG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9J1M_056 not in the Motif Atlas
- Geometric match to IL_3LQX_002
- Geometric discrepancy: 0.2623
- The information below is about IL_3LQX_002
- Detailed Annotation
- tSH-tHW-tHS-cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_35186.1
- Basepair signature
- cWW-L-R-L-R-L-R-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
9J1M|1|A|C|1711
9J1M|1|A|G|1712
9J1M|1|A|G|1713
9J1M|1|A|U|1714
9J1M|1|A|A|1715
9J1M|1|A|G|1716
*
9J1M|1|A|U|1752
9J1M|1|A|G|1753
9J1M|1|A|A|1754
9J1M|1|A|G|1755
9J1M|1|A|A|1756
9J1M|1|A|G|1757
Current chains
- Chain A
- 23S rRNA
Nearby chains
No other chains within 10ÅColoring options: