3D structure

PDB id
9J1M (explore in PDB, NAKB, or RNA 3D Hub)
Description
KU13-bond Mycobacterium tuberculosis 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2.33 Å

Loop

Sequence
CGGUAG*UGAGAG
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9J1M_056 not in the Motif Atlas
Geometric match to IL_3LQX_002
Geometric discrepancy: 0.2623
The information below is about IL_3LQX_002
Detailed Annotation
tSH-tHW-tHS-cWW
Broad Annotation
No text annotation
Motif group
IL_35186.1
Basepair signature
cWW-L-R-L-R-L-R-cWW-cWW
Number of instances in this motif group
4

Unit IDs

9J1M|1|A|C|1711
9J1M|1|A|G|1712
9J1M|1|A|G|1713
9J1M|1|A|U|1714
9J1M|1|A|A|1715
9J1M|1|A|G|1716
*
9J1M|1|A|U|1752
9J1M|1|A|G|1753
9J1M|1|A|A|1754
9J1M|1|A|G|1755
9J1M|1|A|A|1756
9J1M|1|A|G|1757

Current chains

Chain A
23S rRNA

Nearby chains

No other chains within 10Å

Coloring options:


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