IL_9J1M_068

3D structure

PDB id

9J1M (explore in PDB, NAKB, or RNA 3D Hub)

Description

KU13-bond Mycobacterium tuberculosis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

UGCGAAG*CGAUGUAUA

Length

16 nucleotides

Bulged bases

9J1M|1|A|G|2035, 9J1M|1|A|U|2050, 9J1M|1|A|U|2054

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9J1M_068 not in the Motif Atlas

Geometric match to IL_9DFE_070

Geometric discrepancy: 0.0725

The information below is about IL_9DFE_070

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_17069.6

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

9J1M|1|A|U|2032
9J1M|1|A|G|2033
9J1M|1|A|C|2034
9J1M|1|A|G|2035
9J1M|1|A|A|2036
9J1M|1|A|A|2037
9J1M|1|A|G|2038
*
9J1M|1|A|C|2047
9J1M|1|A|G|2048
9J1M|1|A|A|2049
9J1M|1|A|U|2050
9J1M|1|A|G|2051
9J1M|1|A|U|2052
9J1M|1|A|A|2053
9J1M|1|A|U|2054
9J1M|1|A|A|2055

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

Large ribosomal subunit protein uL2

Chain a

Small subunit ribosomal RNA; SSU rRNA