3D structure

PDB id
9J1M (explore in PDB, NAKB, or RNA 3D Hub)
Description
KU13-bond Mycobacterium tuberculosis 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2.33 Å

Loop

Sequence
CGAAA(5MU)UCCUUG*CCUG
Length
16 nucleotides
Bulged bases
9J1M|1|A|A|2176, 9J1M|1|A|U|2182, 9J1M|1|A|U|2201
QA status
Modified nucleotides: 5MU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9J1M_076 not in the Motif Atlas
Geometric match to IL_7A0S_072
Geometric discrepancy: 0.1093
The information below is about IL_7A0S_072
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_04332.3
Basepair signature
cWW-L-R-L-cWW-L-L-R-L-R-L
Number of instances in this motif group
2

Unit IDs

9J1M|1|A|C|2172
9J1M|1|A|G|2173
9J1M|1|A|A|2174
9J1M|1|A|A|2175
9J1M|1|A|A|2176
9J1M|1|A|5MU|2177
9J1M|1|A|U|2178
9J1M|1|A|C|2179
9J1M|1|A|C|2180
9J1M|1|A|U|2181
9J1M|1|A|U|2182
9J1M|1|A|G|2183
*
9J1M|1|A|C|2199
9J1M|1|A|C|2200
9J1M|1|A|U|2201
9J1M|1|A|G|2202

Current chains

Chain A
23S rRNA

Nearby chains

Chain C
Large ribosomal subunit protein uL2
Chain a
Small subunit ribosomal RNA; SSU rRNA
Chain x
Mitochondrial domain of uncharacterised function (DUF1713)

Coloring options:


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