IL_9J1M_076
3D structure
- PDB id
- 9J1M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- KU13-bond Mycobacterium tuberculosis 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.33 Å
Loop
- Sequence
- CGAAA(5MU)UCCUUG*CCUG
- Length
- 16 nucleotides
- Bulged bases
- 9J1M|1|A|A|2176, 9J1M|1|A|U|2182, 9J1M|1|A|U|2201
- QA status
- Modified nucleotides: 5MU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9J1M_076 not in the Motif Atlas
- Geometric match to IL_7A0S_072
- Geometric discrepancy: 0.1093
- The information below is about IL_7A0S_072
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_04332.3
- Basepair signature
- cWW-L-R-L-cWW-L-L-R-L-R-L
- Number of instances in this motif group
- 2
Unit IDs
9J1M|1|A|C|2172
9J1M|1|A|G|2173
9J1M|1|A|A|2174
9J1M|1|A|A|2175
9J1M|1|A|A|2176
9J1M|1|A|5MU|2177
9J1M|1|A|U|2178
9J1M|1|A|C|2179
9J1M|1|A|C|2180
9J1M|1|A|U|2181
9J1M|1|A|U|2182
9J1M|1|A|G|2183
*
9J1M|1|A|C|2199
9J1M|1|A|C|2200
9J1M|1|A|U|2201
9J1M|1|A|G|2202
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain C
- Large ribosomal subunit protein uL2
- Chain a
- Small subunit ribosomal RNA; SSU rRNA
- Chain x
- Mitochondrial domain of uncharacterised function (DUF1713)
Coloring options: