IL_9J1M_089

3D structure

PDB id

9J1M (explore in PDB, NAKB, or RNA 3D Hub)

Description

KU13-bond Mycobacterium tuberculosis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

AUC*GGUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9J1M_089 not in the Motif Atlas

Homologous match to IL_9DFE_094

Geometric discrepancy: 0.0825

The information below is about IL_9DFE_094

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36931.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

24

Unit IDs

9J1M|1|A|A|2697
9J1M|1|A|U|2698
9J1M|1|A|C|2699
*
9J1M|1|A|G|2727
9J1M|1|A|G|2728
9J1M|1|A|U|2729
9J1M|1|A|U|2730
9J1M|1|A|U|2731

Current chains

Chain A

23S rRNA

Nearby chains

Chain 7

30S ribosomal protein THX

Chain M

Large ribosomal subunit protein uL16